--- /dev/null
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE delegatemap [
+ <!ELEMENT delegatemap (delegate+)>
+ <!ELEMENT delegate (#PCDATA)>
+ <!ATTLIST delegate decode CDATA #IMPLIED>
+ <!ATTLIST delegate encode CDATA #IMPLIED>
+ <!ATTLIST delegate mode CDATA #IMPLIED>
+ <!ATTLIST delegate spawn CDATA #IMPLIED>
+ <!ATTLIST delegate stealth CDATA #IMPLIED>
+ <!ATTLIST delegate command CDATA #REQUIRED>
+]>
+<!--
+ Delegate command file.
+
+ Commands which specify
+
+ decode="in_format" encode="out_format"
+
+ specify the rules for converting from in_format to out_format These
+ rules may be used to translate directly between formats.
+
+ Commands which specify only
+
+ decode="in_format"
+
+ specify the rules for converting from in_format to some format that
+ ImageMagick will automatically recognize. These rules are used to
+ decode formats.
+
+ Commands which specify only
+
+ encode="out_format"
+
+ specify the rules for an "encoder" which may accept any input format.
+
+ For delegates other than ps:alpha, ps:color, ps:cmyk, ps:mono, pcl-color,
+ pcl-cmyk, pcl-mono, and mpeg-encode the substitution rules are as follows:
+
+ %i input image filename
+ %o output image filename
+ %u unique temporary filename
+ %z secondary unique temporary filename
+
+ %# input image signature
+ %b image file size
+ %c input image comment
+ %g window group
+ %h image rows (height)
+ %k input image number colors
+ %m input image format
+ %p page number
+ %q input image depth
+ %s scene number
+ %w image columns (width)
+ %x input image x resolution
+ %y input image y resolution
+
+-->
+<delegatemap>
+ <delegate decode="autotrace" stealth="True" command='"autotrace" -output-format svg -output-file "%o" "%i"' />
+ <delegate decode="browse" stealth="True" spawn="True" command='"htmlview" http://www.imagemagick.org/' />
+ <delegate decode="cgm" thread-support="False" command='"ralcgm" -d ps -oC < "%i" > "%o" 2>/dev/null' />
+ <delegate decode="cr2" thread-support="False" command='"dcraw" -3 -w -c "%i" > "%o"' />
+ <delegate decode="crw" thread-support="False" command='"dcraw" -3 -w -c "%i" > "%o"' />
+ <delegate decode="dcr" thread-support="False" command='"dcraw" -3 -w -c "%i" > "%o"' />
+ <delegate decode="mrw" thread-support="False" command='"dcraw" -3 -w -c "%i" > "%o"' />
+ <delegate decode="nef" thread-support="False" command='"dcraw" -3 -w -c "%i" > "%o"' />
+ <delegate decode="orf" thread-support="False" command='"dcraw" -3 -w -c "%i" > "%o"' />
+ <delegate decode="raf" thread-support="False" command='"dcraw" -3 -w -c "%i" > "%o"' />
+ <delegate decode="x3f" thread-support="False" command='"dcraw" -3 -w -c "%i" > "%o"' />
+ <delegate decode="dvi" command='"dvips" -R -q -o "%o" "%i"' />
+ <delegate decode="edit" stealth="True" command='"xterm" -title "Edit Image Comment" -e vi "%o"' />
+ <delegate decode="eps" encode="pdf" mode="bi" command='"gs" -q -dBATCH -dSAFER -dMaxBitmap=500000000 -dNOPAUSE -dAlignToPixels=0 -dEPSCrop -sDEVICE="pdfwrite" -sOutputFile="%o" -f"%i"' />
+ <delegate decode="eps" encode="ps" mode="bi" command='"gs" -q -dBATCH -dSAFER -dMaxBitmap=500000000 -dNOPAUSE -dAlignToPixels=0 -dEPSCrop -sDEVICE="pswrite" -sOutputFile="%o" -f"%i"' />
+ <delegate decode="fig" command='"fig2dev" -L ps "%i" "%o"' />
+ <delegate decode="gplt" command='"echo" "set size 1.25,0.62
+ set terminal postscript portrait color solid; set output "%o"; load "%i"" > "%u";"gnuplot" "%u"' />
+ <delegate decode="ps:alpha" stealth="True" command='"gs" -q -dBATCH -dSAFER -dMaxBitmap=500000000 -dNOPAUSE -dAlignToPixels=0 -dEPSCrop "-sDEVICE=pnmraw" -dTextAlphaBits=%u -dGraphicsAlphaBits=%u "-g%s" "-r%s" %s "-sOutputFile=%s" "-f%s" "-f%s"' />
+ <delegate decode="ps:color" stealth="True" command='"gs" -q -dBATCH -dSAFER -dMaxBitmap=500000000 -dNOPAUSE -dAlignToPixels=0 -dEPSCrop "-sDEVICE=pnmraw" -dTextAlphaBits=%u -dGraphicsAlphaBits=%u "-g%s" "-r%s" %s "-sOutputFile=%s" "-f%s" "-f%s"' />
+ <delegate decode="ps:cmyk" stealth="True" command='"gs" -q -dBATCH -dSAFER -dMaxBitmap=500000000 -dNOPAUSE -dAlignToPixels=0 -dEPSCrop "-sDEVICE=bmpsep8" -dTextAlphaBits=%u -dGraphicsAlphaBits=%u "-g%s" "-r%s" %s "-sOutputFile=%s" "-f%s" "-f%s"' />
+ <delegate decode="ps:mono" stealth="True" command='"gs" -q -dBATCH -dSAFER -dMaxBitmap=500000000 -dNOPAUSE -dAlignToPixels=0 -dEPSCrop "-sDEVICE=pbmraw" -dTextAlphaBits=%u -dGraphicsAlphaBits=%u "-g%s" "-r%s" %s "-sOutputFile=%s" "-f%s" "-f%s"' />
+ <delegate decode="hpg" command='"hp2xx" -q -m eps -f `basename "%o"` "%i"
+ mv -f `basename "%o"` "%o"' />
+ <delegate decode="hpgl" command='if [ -e hp2xx -o -e /usr/bin/hp2xx ]; then
+ hp2xx -q -m eps -f `basename "%o"` "%i"
+ mv -f `basename "%o"` "%o
+ else
+ echo "You need to install hp2xx to use HPGL files with ImageMagick."
+ exit 1
+ fi' />
+ <delegate decode="htm" command='"html2ps" -U -o "%o" "%i"' />
+ <delegate decode="html" command='"html2ps" -U -o "%o" "%i"' />
+ <delegate decode="https" command='"wget" -q -O "%o" "https:%M"' />
+ <delegate decode="ilbm" command='"ilbmtoppm" "%i" > "%o"' />
+ <delegate decode="man" command='"groff" -man -Tps "%i" > "%o"' />
+ <delegate decode="mpeg-decode" stealth="True" command='"mpeg2decode" -q -b "%i" -f -r -o3 "%u%%d"' />
+ <delegate encode="mpeg-encode" stealth="True" command='"mpeg2encode" "%i" "%o"' />
+ <delegate decode="pcl-color" stealth="True" command='"pcl6" -dBATCH -dSAFER -dMaxBitmap=500000000 -dNOPAUSE -dAlignToPixels=0 -dEPSCrop "-sDEVICE=ppmraw" -dTextAlphaBits=%u -dGraphicsAlphaBits=%u "-g%s" "-r%s" %s "-sOutputFile=%s" "%s"' />
+ <delegate decode="pcl-cmyk" stealth="True" command='"pcl6" -dBATCH -dSAFER -dMaxBitmap=500000000 -dNOPAUSE -dAlignToPixels=0 -dEPSCrop "-sDEVICE=bmpsep8" -dTextAlphaBits=%u -dGraphicsAlphaBits=%u "-g%s" "-r%s" %s "-sOutputFile=%s" "%s"' />
+ <delegate decode="pcl-mono" stealth="True" command='"pcl6" -dBATCH -dSAFER -dMaxBitmap=500000000 -dNOPAUSE -dAlignToPixels=0 -dEPSCrop "-sDEVICE=pbmraw" -dTextAlphaBits=%u -dGraphicsAlphaBits=%u "-g%s" "-r%s" %s "-sOutputFile=%s" "%s"' />
+ <delegate decode="pdf" encode="eps" mode="bi" command='"gs" -q -dBATCH -dSAFER -dMaxBitmap=500000000 -dNOPAUSE -dAlignToPixels=0 -dEPSCrop -sDEVICE="epswrite" -sOutputFile="%o" -f"%i"' />
+ <delegate decode="pdf" encode="ps" mode="bi" command='"gs" -q -dBATCH -dSAFER -dMaxBitmap=500000000 -dNOPAUSE -dAlignToPixels=0 -dEPSCrop -sDEVICE="pswrite" -sOutputFile="%o" -f"%i"' />
+ <delegate decode="pnm" encode="ilbm" mode="encode" command='"ppmtoilbm" -24if "%i" > "%o"' />
+ <delegate decode="pnm" encode="launch" mode="encode" command='"gimp" "%i"' />
+ <delegate decode="miff" encode="win" mode="encode" command='"/usr/local/bin/display" -immutable "%i"' />
+ <delegate decode="pov" command='"povray" "+i"%i"" -D0 +o"%o" +fn%q +w%w +h%h +a -q9 -kfi"%s" -kff"%n"
+ "convert" -concatenate "%o*.png" "%o"' />
+ <delegate decode="ps" encode="eps" mode="bi" command='"gs" -q -dBATCH -dSAFER -dMaxBitmap=500000000 -dNOPAUSE -dAlignToPixels=0 -dEPSCrop -sDEVICE="epswrite" -sOutputFile="%o" -f"%i"' />
+ <delegate decode="ps" encode="pdf" mode="bi" command='"gs" -q -dBATCH -dSAFER -dMaxBitmap=500000000 -dNOPAUSE -dAlignToPixels=0 -dEPSCrop -sDEVICE="pdfwrite" -sOutputFile="%o" -f"%i"' />
+ <delegate decode="ps" encode="print" mode="encode" command='lpr "%i"' />
+ <delegate decode="rad" command='"ra_ppm" -g 1.0 "%i" "%o"' />
+ <delegate decode="rgba" encode="rle" mode="encode" command='"modify" -flip -size %wx%h "rgba:%i"
+ "rawtorle" -w %w -h %h -n 4 -o "%o" "%i"' />
+ <delegate decode="scan" command='"scanimage" -d "%i" > "%o"' />
+ <delegate decode="shtml" command='"html2ps" -U -o "%o" "%i"' />
+ <delegate decode="svg" command='"wmf2svg" -o "%o" "%i"' />
+ <delegate decode="txt" encode="ps" mode="bi" command='"enscript" -o "%o" "%i"' />
+ <delegate decode="wmf" command='"wmf2svg" -o "%o" "%i"' />
+ <delegate encode="show" stealth="True" spawn="True" command='"/usr/local/bin/display" -immutable -delay 0 -window_group %g -title "%l of %f" "tmp:%i"' />
+</delegatemap>
--- /dev/null
+[
+
+type = "dag";
+
+stdoutput = "std.out";
+stderror = "std.err";
+outputsandbox = { "std.out", "std.err" };
+
+nodes = [
+ align1 = [ description = [
+ executable = "align.sh";
+ arguments = "BASE1 REFERENCE";
+ inputsandbox = { "align.sh", "align_warp", "scanheader" };
+ ] ];
+ align2 = [ description = [
+ executable = "align.sh";
+ arguments = "BASE2 REFERENCE";
+ inputsandbox = { "align.sh", "align_warp" };
+ ] ];
+ align3 = [ description = [
+ executable = "align.sh";
+ arguments = "BASE3 REFERENCE";
+ inputsandbox = { "align.sh", "align_warp" };
+ ] ];
+ align4 = [ description = [
+ executable = "align.sh";
+ arguments = "BASE4 REFERENCE";
+ inputsandbox = { "align.sh", "align_warp" };
+ ] ];
+
+
+ reslice1 = [ description = [
+ executable = "reslice.sh";
+ arguments = "BASE1";
+ inputsandbox = { "reslice.sh", "reslice" };
+ ] ];
+ reslice2 = [ description = [
+ executable = "reslice.sh";
+ arguments = "BASE2";
+ inputsandbox = { "reslice.sh", "reslice" };
+ ] ];
+ reslice3 = [ description = [
+ executable = "reslice.sh";
+ arguments = "BASE3";
+ inputsandbox = { "reslice.sh", "reslice" };
+ ] ];
+ reslice4 = [ description = [
+ executable = "reslice.sh";
+ arguments = "BASE4";
+ inputsandbox = { "reslice.sh", "reslice" };
+ ] ];
+
+ softmean = [ description = [
+ executable = "softmean.sh";
+ arguments = "BASE1 BASE2 BASE3 BASE4 ATLAS";
+ inputsandbox = { "softmean.sh", "softmean" };
+ ] ];
+
+ slicerx = [ description = [
+ executable = "slicer.sh";
+ arguments = "ATLAS x";
+ inputsandbox = { "slicer.sh", "slicer" };
+ ] ];
+ slicery = [ description = [
+ executable = "slicer.sh";
+ arguments = "ATLAS y";
+ inputsandbox = { "slicer.sh", "slicer" };
+ ] ];
+ slicerz = [ description = [
+ executable = "slicer.sh";
+ arguments = "ATLAS z";
+ inputsandbox = { "slicer.sh", "slicer" };
+ ] ];
+
+ convertx = [ description = [
+ executable = "convert.sh";
+ arguments = "ATLAS x";
+ inputsandbox = { "convert.sh", "convert", "delegates.xml" };
+ ] ];
+ converty = [ description = [
+ executable = "convert.sh";
+ arguments = "ATLAS y";
+ inputsandbox = { "convert.sh", "convert", "delegates.xml" };
+ ] ];
+ convertz = [ description = [
+ executable = "convert.sh";
+ arguments = "ATLAS z";
+ inputsandbox = { "convert.sh", "convert", "delegates.xml" };
+ ] ];
+
+];
+
+ dependencies = {
+ { align1, reslice1 },
+ { align2, reslice2 },
+ { align3, reslice3 },
+ { align4, reslice4 },
+ { { reslice1, reslice2, reslice3, reslice4 }, softmean },
+ { softmean, { slicerx, slicery, slicerz } },
+ { slicerx, convertx },
+ { slicery, converty },
+ { slicerz, convertz }
+ };
+
+
+
+];
git://scientific.zcu.cz / jra1mw.git / commitdiff